rs29936889 SNP Detail

Summary

• ID
  rs29936889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121424409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT CCTCAGAGCC ACTGTGAGGA
  R
  CAGTTCCCAA AGGGCATTTT CTTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46357300	mCV25163131	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss50803333	NES14204454	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G		G	A		G	A	G	G
ss137068117	ENSMUSSNP675395	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss323231648	CHEV_9_121504461	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29936889					SNP	A	A	G	G	A	G	A	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50803333	NES14204454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121424409 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	1206 bp downstream
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199243	regulatory region 199243	409 bp distal
Rr199244	regulatory region 199244	9 bp distal
Tssr92055	transcription start site region 92055	1866 bp downstream