rs29938013 SNP Detail

Summary

• ID
  rs29938013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25015001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGACTCCC AGGCCAGCCT
  GGACTACAAG GGTTCTCAGC CAACAAACGT TACATAGTTA CATAGACCTA GTTACAAAGA
  CCTAGTCTCA AAAGCAAGAA ATACAACACA CGTACAGGTG GTTCTCGCAT TCACTTCCGT
  ACCTCAAACC TCCTTGACTC TTAAGAAACA ATTCCTATAT ACTAGCCCTG CAGGCTCCAG
  Y
  GTCCCTTAAA TGGTACGCTG ACATTTTTTC TCCACACACT CCAACAGTTT GCTGGTTAAA
  AAAAAAACAA AAAACAAAAA ACCAAACATG CTTATTTACG TTTCGATGAG AATCCACGCC
  ACGCACTTCC CCTGCGTTTG CGAGGCCACT AAGGTGTTTT ACTAGGTTCG TCCCCTTCAC
  CAGATACTTC GCCTACAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47397633	NES11365689	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		C	T	C	C		C
ss324298724	CHEV_13_24922887	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29938013					SNP	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47397633	NES11365689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25015001 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	93 bp proximal
Rr281160	regulatory region 281160	within coordinates
Rr403682	regulatory region 403682	428 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	661 bp upstream
Tssr118970	transcription start site region 118970	643 bp upstream
Tssr118971	transcription start site region 118971	682 bp upstream
Tssr121812	transcription start site region 121812	304 bp downstream
Tssr121813	transcription start site region 121813	319 bp downstream
Tssr121814	transcription start site region 121814	335 bp downstream
Tssr121815	transcription start site region 121815	391 bp downstream
Tssr121816	transcription start site region 121816	570 bp downstream