rs29940040 SNP Detail

Summary

• ID
  rs29940040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106767330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA GAAAGGGTAT GCAGAGATGG
  Y
  AGAAGGCACA GGGTCCGAGT CACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46357133	mCV22323031	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136941092	ENSMUSSNP4878115	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss323187628	CHEV_9_106792462	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29940040					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106767330 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	1380 bp upstream
Cpgi22278	CpG island 22278	1233 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	1769 bp upstream
Rr686409	regulatory region 686409	1096 bp proximal
Rr686410	regulatory region 686410	1274 bp proximal
Rr686411	regulatory region 686411	1656 bp proximal
Rr686412	regulatory region 686412	1824 bp proximal
Rr686413	regulatory region 686413	1838 bp proximal
Tssr86942	transcription start site region 86942	50 bp upstream
Tssr86943	transcription start site region 86943	1983 bp upstream
Tssr91353	transcription start site region 91353	1235 bp downstream
Tssr91354	transcription start site region 91354	1249 bp downstream
Tssr91355	transcription start site region 91355	1263 bp downstream
Tssr91356	transcription start site region 91356	1270 bp downstream
Tssr91357	transcription start site region 91357	1777 bp downstream
Tssr91358	transcription start site region 91358	1800 bp downstream
Tssr91359	transcription start site region 91359	1834 bp downstream