rs29940154 SNP Detail

Summary

• ID
  rs29940154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48939336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTGGTGT GGATGTTATC TTGTGTTTGT GTGGGCATTC
  CCTTTTACTT GCTGGTTGGG AATGTTCAGA ATTGTATTGA CATAGATAGC ATCTGACTTC
  Y
  GGGCCTGGTC TGAGAGCCCC CCTTTCTGAT TTGCAGGTGC CTTATCGCTT ACATGCAGTT
  CTTGTTCACG AAGGACAAGC CAGTGCAGGA CACTACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46357728	mCV22641018	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136466278	ENSMUSSNP2481286	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29940154					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48939336 () rs orientation: forward

Symbol	Name	Function Class
1700042D02Rik	RIKEN cDNA 1700042D02 gene	within coordinates
Tssr85003	transcription start site region 85003	92 bp upstream
Usp28	ubiquitin specific peptidase 28	within coordinates