rs29940579 SNP Detail

Summary

• ID
  rs29940579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32666043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAGGGGCTG GGGGAACCCT GCTGAGACCT TTCAAAGAGC AACCCTGTTG GTTGGACTCT
  TCATTTTTAA TTGTTATTCA ATGTTTTATT TTCCAGAACT CATTTTTCAC ATTCAGGGGT
  GGGAGCTGAG GGAGCGCCGC TGTATTCCAT TGGCCATTGG TGGGCCGGAA AGAGGAGGTC
  AGGACCTGCG GGGTGGGCGG GGCAATAGCT CCTGAGCAGA CTTTCAGAAG GGAGAGGTCT
  TCTCAGAAGC CTGTTGGACC TGGCTTGCAG AGGAAAAAAA AACTTAAGTG TCCGTTTTTT
  W
  TTTTTTTTTT TTTAAATCAA AGAAAAAAAA ATCATCTTGA GTTGTGGATC TACTAGTGGG
  AGGAATGATC ACATTGAGAT GAAAGAGATT GATGAAAGCC AGTCAGTTTT GTGGGTGGGC
  TGAAAACAGT TTCTTCAGGG GATTACTAAA CTCAAGAATT ATTAACCTTT CTACTTTTTG
  AAACAATGAT GGACTTTGAT TGAAGGGGTC CAAAACTGTT TTTATGTTGA AGTTTATTTT
  ATTAAATTTT GTGCCAGTAT TTTTTTTTCC TTAAAAAAAT ATCGTCTTAA GCTCTAAGGT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46358611	mCV23152201	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29940579					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32666043 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr676252	regulatory region 676252	1321 bp proximal
Tssr84300	transcription start site region 84300	1887 bp downstream
Tssr84301	transcription start site region 84301	286 bp downstream
Tssr84302	transcription start site region 84302	97 bp downstream
Tssr84303	transcription start site region 84303	13 bp upstream