rs29940764 SNP Detail

Summary

• ID
  rs29940764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:40488571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGTTTA TCCTTCCTTC
  CAACAATGAA CTGTCAAAGA TGAGACAGGA TTTGCATGAA TGATGGAATT AGAGATCAGG
  CGTGGTCAGA ATTGTCAGCA ATGTGGGAAG AACTGAGGAC TACTTTCCTG GTTGCCACAG
  AGTTTGGAGG CCATTTATTC TCAGCTCCAG TCTAGGCATT GCTAAAGGCA AAGATCTGGA
  K
  TAAGGAGTGC AGGGCCCTGG TCCCTCATTC CTGGCCCCAT GTATATTAGT TTGCTTTGCT
  CTGACATAAA GGCTCATTTT ATCCCCTCAG ACTAGAAGAA GATAAAAAGA AAAACAGAAG
  ATGTAGAGAG GATAAAAAAA AATGTGTCTT ACAGAGATAA GGTGGGAAAG AAAGATGTGA
  CAGGAGAGGA GATACCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46897094	NES10950710	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29940764					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46897094	NES10950710	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:40488571 () rs orientation: forward

Symbol	Name	Function Class
Gria3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	1160 bp upstream
Rr394967	regulatory region 394967	1759 bp upstream
Rr690837	regulatory region 690837	285 bp proximal
Rr690838	regulatory region 690838	1344 bp proximal
Tssr160796	transcription start site region 160796	904 bp upstream
Tssr160797	transcription start site region 160797	963 bp upstream
Tssr160798	transcription start site region 160798	993 bp upstream
Tssr160799	transcription start site region 160799	1022 bp upstream
Tssr160800	transcription start site region 160800	1111 bp upstream
Tssr160801	transcription start site region 160801	1145 bp upstream
Tssr160802	transcription start site region 160802	1208 bp upstream
Tssr160803	transcription start site region 160803	1464 bp upstream
Tssr160804	transcription start site region 160804	1695 bp upstream
Tssr160805	transcription start site region 160805	1782 bp upstream
Tssr160806	transcription start site region 160806	1920 bp upstream