rs29940767 SNP Detail

Summary

• ID
  rs29940767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:40491010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATGCTG CAAGAGGCTA
  AGAGTCGCGG CTTTTCAGCT CGCTATTCTG GACTTTGCCA GGGCATGCTT GCAGCCACTG
  GAAGTTGTCC CAGGGTGATA CTGCCTGTCT GGCCGCGCCA GGACGCATAA CCTGGGCCCA
  GGTCGCCCCG TCCCGCGTCT CAGGCTTCAG TGAGACAGGA CAGTGTTAGA AGAAAAGGAA
  Y
  CCACTTTGAA ACCCCCAGAC CAAGGAAGTA GCTGTGTGGA TGGAGGATGG GGTGGGAAGT
  GGGGGTGATA CAAGGAGTCG GGCAAGCAGG GAAGTCACGC AGACCAAGCA TTCATGAATT
  GCGGCTGTGT CTGTCTGGAG ACCAGCTCCA GTAGCCGGAA GGGAGTTCTC CCCGCCTCTG
  CCTGTATTTG CAAGTAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46897097	NES10950669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29940767					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46897097	NES10950669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:40491010 () rs orientation: forward

Symbol	Name	Function Class
Gria3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	within coordinates
Rr394967	regulatory region 394967	within coordinates
Rr690837	regulatory region 690837	1191 bp distal
Rr690838	regulatory region 690838	558 bp distal
Tssr160796	transcription start site region 160796	1530 bp downstream
Tssr160797	transcription start site region 160797	1465 bp downstream
Tssr160798	transcription start site region 160798	1433 bp downstream
Tssr160799	transcription start site region 160799	1404 bp downstream
Tssr160800	transcription start site region 160800	1300 bp downstream
Tssr160801	transcription start site region 160801	1248 bp downstream
Tssr160802	transcription start site region 160802	1226 bp downstream
Tssr160803	transcription start site region 160803	933 bp downstream
Tssr160804	transcription start site region 160804	706 bp downstream
Tssr160805	transcription start site region 160805	568 bp downstream
Tssr160806	transcription start site region 160806	508 bp downstream