rs29941536 SNP Detail

Summary

• ID
  rs29941536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25015705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCGGCC CCTCCTTCCC
  CTCCCCTCCC CCTCCCCCTC CCCATCTGCG CCTCGCTGGC CGCGGACGGG GACCAGAGAG
  GGCGGTCTTC TTGCCGGAAG GTTGACGCGG ACGCGCTTGC ACGCTGCGCG CCTGCGCAGG
  TTCCGGCGTT CGCGATCAGT CGCGCGGGAA GCAGCGTGAA GAGCGGGTGT TTTGAGGGGA
  Y
  CCTGCGGCGA TGGCGTCTGG CAGCAGTTCC GATGCGGCGG AGCCCGCAGG GCCGGCAGGG
  CGGGCGGCGT CGGCGCCCGA AGCAGCACAG GCGGAGGAGG ACCGGGTGAA GAGGCGGCGG
  CTTCAGTGCC TGGGCTTTGC GTTGGTGGGG GGATGCGACC CCACGATGGT CCCCAGCGTC
  CTGCGGGAGA ACGACTGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47397666	NES11365720	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		C	T	C	C		C
ss324298734	CHEV_13_24923591	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29941536					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47397666	NES11365720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25015705 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	233 bp upstream
Cpgi5387	CpG island 5387	within coordinates
Rr281160	regulatory region 281160	within coordinates
Rr403682	regulatory region 403682	within coordinates
Tdp2	tyrosyl-DNA phosphodiesterase 2	within coordinates
Tssr118970	transcription start site region 118970	35 bp downstream
Tssr118971	transcription start site region 118971	1 bp downstream
Tssr121812	transcription start site region 121812	389 bp upstream
Tssr121813	transcription start site region 121813	374 bp upstream
Tssr121814	transcription start site region 121814	314 bp upstream
Tssr121815	transcription start site region 121815	204 bp upstream
Tssr121816	transcription start site region 121816	83 bp upstream