rs29942056 SNP Detail

Summary

• ID
  rs29942056
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77920908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTGCTG CAGCTGGCTA
  GCATGGGGGT CAGCTCTTTT GCTCTCATAC CCCCAGGACC AGTTCTCCCA TGATGCCCAG
  GTGAGTGGTG GGGCAGTTCT GCACAACCTT CAGACATCAA CATGTCCCCA GGCAGCAGCA
  CAGATCAGGG ACCTCTGCCT GGCTTTTGGT GGTAACAGAC CCCTGCTACT CCAGAGCCAC
  W
  GACCCAGACA TGACCCTCAA TGGAGCATAG GCCAGGACCC CACCATGATC CTAGTGGCAT
  CACATCACAG ATGTGGCCAC TCACATCAAG CTGTTCCTCA CTACCCTCAA GTCTCTACAT
  CTGCCTCTCT CCCTTATACT CACATCCTTC TGTTTCTCTT TCTCTTCCAT TTCTCCACCG
  CTGATTGCTT GGGTCTCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46357828	mCV22525213	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss136663620	ENSMUSSNP6366777	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29942056					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77920908 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	346 bp downstream
Gm39375	predicted gene, 39375	1392 bp upstream
Gm69108	predicted gene, 69108	within coordinates
Rr683457	regulatory region 683457	410 bp proximal