rs29942968 SNP Detail

Summary

• ID
  rs29942968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86426883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATTGAA CTACCTTTCC
  TTCAGTCTCT TCTCCATTCA TCAAATAGTC AGTGAAAGGT GACAGCACTA TGCTAACATT
  TATAAAAATT TTAAATTAGG AAGTGAGGTT GTAAAGGAAA TGGAGTATTG TGTAATAAAT
  TTCAACAGCA AAGAGCTCAT ATTGCATATG AAACTGAGGG AGCCAGCCCT TCCTAGAAAC
  R
  GAATTTCCAA CATAGGGAAC AAAATTACAA AGTGATTTCT GGAGTGAGAG CAAATTCAGT
  GAGTTCATGT CATACCCAAC AAGACAATAT GCTATAGCAG GCAAGTCATG AGCAAGGAGC
  TCAATATAAA GAAAGGCTAG GAAGTCAGAC CAGCTTCATC TCTCCAGAAG TTATTTTTTA
  AAGTAATATA GAAGATTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46357664	mCV24274696	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss61435737	NES16815193	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	G	G	G	G	G	G	G	G
ss136757203	ENSMUSSNP5517489	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29942968					SNP	G	A	G	A	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61435737	NES16815193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86426883 () rs orientation: forward

Symbol	Name	Function Class
D9Mit111	DNA segment, Chr 9, Massachusetts Institute of Technology 111	1683 bp proximal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Gm17530	predicted gene, 17530	1852 bp downstream
Rr211041	regulatory region 211041	1083 bp distal
Tssr86395	transcription start site region 86395	400 bp upstream
Tssr86396	transcription start site region 86396	426 bp upstream