rs29943695 SNP Detail

Summary

• ID
  rs29943695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43648681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA GATTGCAAGA CCGGAGGCAT
  R
  AGTGAAATCC CAAGCTTGCT GAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39134943	mCV22970933	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		G
ss49107348	NES12425218	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	G	A	G	G	G	A	G
ss148942684	ENSMUSSNP2253411	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29943695					SNP	A	A	A	G	A	A	A	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49107348	NES12425218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43648681 () rs orientation: forward

Symbol	Name	Function Class
Gm32878	predicted gene, 32878	448 bp downstream
Gm47683	predicted gene, 47683	within coordinates
Rr283572	regulatory region 283572	882 bp distal
Rr283573	regulatory region 283573	1321 bp proximal
Tssr119503	transcription start site region 119503	1211 bp downstream