rs29943953 SNP Detail

Summary

• ID
  rs29943953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25014162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATGCTG TGGCACATAC
  TATTCATCCC AATACTCAAG TAGCAGAGGC TGATCAATCT CTGTGAGATC CAGGATGACC
  TGGTCTACAT GTCAAGTTCT GGATAGAACT TAAATAAATA ATAGAAAATA AATAAATAAA
  TAAAACCAAA TAAATACGTT ACAAAATATT CTAATACCCA GGAGGGTGAG GAAAGCTTAC
  R
  GAGAAGTGGC TATGGAACCC TGTCAACGAC AGGTGCCCAC CTGCAACCCT GTCAATGACG
  GGCTCCCACC TGCAAGCTTG GATTAACTAC ATCCCAGTCC TCATAAAGTT GTTTTTGGTT
  GTTTTTAAAG AATTAAAATT TCCTCTTAAA TCATTAAAAT TCTTTTTAGG TAATATTATC
  TTTCTAAAAG TCACTGTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47397603	NES11365673	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		A	G	A		G
ss324298718	CHEV_13_24922048	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29943953					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47397603	NES11365673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25014162 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	932 bp proximal
Rr281160	regulatory region 281160	238 bp proximal
Rr403682	regulatory region 403682	1267 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1500 bp upstream
Tssr118970	transcription start site region 118970	1482 bp upstream
Tssr118971	transcription start site region 118971	1521 bp upstream
Tssr121812	transcription start site region 121812	1143 bp downstream
Tssr121813	transcription start site region 121813	1158 bp downstream
Tssr121814	transcription start site region 121814	1174 bp downstream
Tssr121815	transcription start site region 121815	1230 bp downstream
Tssr121816	transcription start site region 121816	1409 bp downstream