rs29943974 SNP Detail

Summary

• ID
  rs29943974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107973711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACTCTCT AGGGTACCAC
  ACTTGAGAGG AATTGATTTG ACCCCAGAGG CTGAATGAGA CTCGTGCACA CACGCACAAA
  CACACACACA CACTCACACA TACATACATA CATACACACA CACACACACA CACACACACA
  CTCATGTACA TGTGCTTACA CATACAGTAT CTCATGACTT CTATGGCTCT CCAGTGCCAC
  Y
  CGGTGCACAT GGTAGCAGGG TGCTGGCACC CAGGGAGACA GAGATGGCAT CTCCAGAGAG
  TTTCATTTGA TTATATATGT CCCTCCGGCC CTGATGGAGT CCATGATGAC ACATTATTTA
  CAGCAAGGGA GGAGAAGGGC TATTGGGCAG GACTGTACTC TCACGGACAA GGACCTGCCT
  GGAAAACTCC CCAGAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46357848	mCV22696227	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136951686	ENSMUSSNP3125532	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29943974					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107973711 () rs orientation: forward

Symbol	Name	Function Class
Apeh	acylpeptide hydrolase	1975 bp upstream
Bsn	bassoon	within coordinates
Cpgi22322	CpG island 22322	1264 bp distal
Gm57046	predicted gene, 57046	within coordinates
Rr401675	regulatory region 401675	1790 bp downstream
Rr686708	regulatory region 686708	1919 bp distal
Rr686709	regulatory region 686709	1295 bp distal
Rr686710	regulatory region 686710	735 bp distal
Rr686711	regulatory region 686711	211 bp distal
Rr686712	regulatory region 686712	within coordinates
Tssr87065	transcription start site region 87065	1816 bp downstream
Tssr87066	transcription start site region 87066	1299 bp downstream
Tssr87067	transcription start site region 87067	1261 bp downstream
Tssr91492	transcription start site region 91492	1970 bp upstream