rs29944721 SNP Detail

Summary

• ID
  rs29944721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45014689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTGTCT TACCCATTAG
  TCTCAGCTCT CAGCTCATAG GTCATGGCTT TGTGCACAGC AGTGACTTGG GAAGCCTTTA
  CCACTGCCTC TGAGAAATGG GCTGGGGCAG GGTAGCCCGG GCCAGATCAG CCGTGGGCGG
  CAGATCCTGG GCGTAGGTAC AGGAAAGAGC CCTGACCTTG AGATCAGAAA GCTCCACTAC
  M
  TTCATGAGCT AGGGCTTACT GATTAAGAGC AGGTGTTCAG GAACCTTTAG AGGAGAGCAA
  GATGGACTTC CTTGTCACAG GGCTTTGAAG TGGAGTTATA AATAGGAGCT GAGAGATTAG
  TTCATTTCCC TGAGCTCCAA TAGTTTCCCC CTCCCTCCCC CCTCCTTTTC TCCTTCCCCC
  TCTCCACATT TTAACTTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46358268	mCV24046722	ABI	CRAMUS_MOUSE	f	SNP	A	C					C		C
ss61388970	NES16766744	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	A	C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29944721					SNP	A	C	C	C	A	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388970	NES16766744	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45014689 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	within coordinates
Tssr84725	transcription start site region 84725	507 bp downstream
Tssr84726	transcription start site region 84726	445 bp upstream
Tssr84727	transcription start site region 84727	475 bp upstream
Tssr84728	transcription start site region 84728	503 bp upstream