rs29944786 SNP Detail

Summary

• ID
  rs29944786
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25014221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGAGAT CCAGGATGAC
  CTGGTCTACA TGTCAAGTTC TGGATAGAAC TTAAATAAAT AATAGAAAAT AAATAAATAA
  ATAAAACCAA ATAAATACGT TACAAAATAT TCTAATACCC AGGAGGGTGA GGAAAGCTTA
  CGGAGAAGTG GCTATGGAAC CCTGTCAACG ACAGGTGCCC ACCTGCAACC CTGTCAATGA
  M
  GGGCTCCCAC CTGCAAGCTT GGATTAACTA CATCCCAGTC CTCATAAAGT TGTTTTTGGT
  TGTTTTTAAA GAATTAAAAT TTCCTCTTAA ATCATTAAAA TTCTTTTTAG GTAATATTAT
  CTTTCTAAAA GTCACTGTCA AATGCTGTCC TTAGTTTTGA AATATTTCCT ATTGGAAAAC
  ATTAAATATA TTTACCTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47397606	NES11365674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A		A	A	C	A		C
ss324298719	CHEV_13_24922107	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29944786					SNP	C	C	C	C	C	C	A	C	C	A	C	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47397606	NES11365674	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25014221 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	873 bp proximal
Rr281160	regulatory region 281160	179 bp proximal
Rr403682	regulatory region 403682	1208 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1441 bp upstream
Tssr118970	transcription start site region 118970	1423 bp upstream
Tssr118971	transcription start site region 118971	1462 bp upstream
Tssr121812	transcription start site region 121812	1084 bp downstream
Tssr121813	transcription start site region 121813	1099 bp downstream
Tssr121814	transcription start site region 121814	1115 bp downstream
Tssr121815	transcription start site region 121815	1171 bp downstream
Tssr121816	transcription start site region 121816	1350 bp downstream