rs29945628 SNP Detail

Summary

• ID
  rs29945628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:101690679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGCACC TACAATCATG
  TTCGCATAGT CACATGTATA TGAACACATA CATGCATGTA ATTAAAAAGT GTAAAAAAAA
  ACCTTAAAGA ATAATGTATT TGAGCAGATG ACCTTCCTTC AATCTTTATT ATGAAGGTTG
  CAGACATACT TGCATTCCTT TTCTTCTAAA TGAGAAATCT AACCTCAGTA TGTAGCTATC
  R
  TAATCCTTTG TTCATAGGTA GGTGTGATAG ATAACTCTTT GGGGGTTTGT TTTGTTAAGT
  TTGTTTGATT GGTTGGTTGG TTGGTTGGTT GGTTGGTTGG TTGGTTGGTT GGTTGGTTCG
  TTGATTTTTT GAGACAGGGT TTCTCTGTGT AACAGCCCTG GCTGTCCTAA AACTCACTTT
  TTAGACTAGG CTGGCCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39134568	mCV23722278	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss51142157	NES14336221	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		G	G	G	G	G	A	A	G	G
ss145098809	ENSMUSSNP4739949	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29945628					SNP	G	A	G	G	G	G	G	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142157	NES14336221	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:101690679 () rs orientation: forward

Symbol	Name	Function Class
Gm36475	predicted gene, 36475	within coordinates
Gm47533	predicted gene, 47533	within coordinates
Tssr4154	transcription start site region 4154	1806 bp upstream