rs29945651 SNP Detail

Summary

• ID
  rs29945651
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25014524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTAGGT AATATTATCT
  TTCTAAAAGT CACTGTCAAA TGCTGTCCTT AGTTTTGAAA TATTTCCTAT TGGAAAACAT
  TAAATATATT TACCTAAGGG TTATTTCCTA TTTTTTTGAC ACTTTATGAA CATAGTTAAA
  AAATTCTAAG AGGGGGCGTG TTCAGGAAAA AGATTTCAAA TGCCTGTTGT TGACCAAAAT
  K
  TATATTTCAT GCCCAAATTC TTTTTAAATT TCCAAGTATT TTTTCTTAAT CAGAAAAATA
  GACATGCGTG CATTAAAACA TTTATTAAAA AGTCTGCAGC AAGTTCTAAG GTTAAGTGTC
  TTTCTACTCT GACAATACCA CGCACTGGAC TTCTGCTACG GATATTTATT AAGGATTGCT
  TCCTATAGAA CACAATGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47397621	NES11365681	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29945651					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47397621	NES11365681	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25014524 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	570 bp proximal
Rr281160	regulatory region 281160	within coordinates
Rr403682	regulatory region 403682	905 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1138 bp upstream
Tssr118970	transcription start site region 118970	1120 bp upstream
Tssr118971	transcription start site region 118971	1159 bp upstream
Tssr121812	transcription start site region 121812	781 bp downstream
Tssr121813	transcription start site region 121813	796 bp downstream
Tssr121814	transcription start site region 121814	812 bp downstream
Tssr121815	transcription start site region 121815	868 bp downstream
Tssr121816	transcription start site region 121816	1047 bp downstream