rs29945824 SNP Detail

Summary

• ID
  rs29945824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40693612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGCATT AAGTCTTAGG
  AAACCAGAAA CTGCTCAGTT CCTTAACTGA CTGCCTTGGA GGTTTATGGC TTGAGGAGTT
  TATTGGAAAA AAAAAAAAAA ATCTCAGGAG GAAGTAACTT TAACGAGCGT CAACCCAGCC
  CCGGCAGTAC TAAAGTTTAT CTTTGCTATC TGTTCACTTT TCCGCTTTCA GAGAAGACGC
  Y
  GAAGCGCCCC GAGCCCGCCT TGTGAAGCCT AGCTCCTCTT CCTCAGGCTC CCGGAGCTCA
  CGCTCTGGCT CCTCCTCCAC CCGCTCCACC GGGAACAGTG CCTCCAGAAG CCAGCGGACG
  CTGTCGAGTG AAGCAGCGCC GCAGCAGCCC GGGCTAGCCC CGCAGGCATA CAGCCTCATA
  GGACCGGAAG TGAGAGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46357868	mCV23403799	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss136338125	ENSMUSSNP6788856	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss322919583	CHEV_9_40590399	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29945824					SNP	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40693612 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	within coordinates
Gm16096	predicted gene 16096	within coordinates
Rr676920	regulatory region 676920	1072 bp proximal
Rr676921	regulatory region 676921	1796 bp proximal
Tssr84467	transcription start site region 84467	1951 bp downstream
Tssr84468	transcription start site region 84468	1226 bp downstream
Tssr84469	transcription start site region 84469	1139 bp downstream
Tssr84470	transcription start site region 84470	within coordinates
Tssr84471	transcription start site region 84471	88 bp upstream
Tssr88968	transcription start site region 88968	739 bp downstream
Tssr88969	transcription start site region 88969	1334 bp downstream
Tssr88970	transcription start site region 88970	1725 bp downstream
Tssr88971	transcription start site region 88971	1824 bp downstream