rs29946954 SNP Detail

Summary

• ID
  rs29946954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39256184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAGACTT AGCCTGTGAA
  GTTATTGTCA CACAAGCTTG AACTCATGAG AACAATTCCT AGGGCCTGTC TAAATGTTAG
  GCACAGCAGC AGGGAACACC TAAAGTTCCA GCTCTGGGAT AGTGGGGACA GGTGTGTCCC
  TTAACCTTAC CAGCTTGTCA ACTTTGCAGC ATAGGTAAAT TCTAGGCTCA GCAAGAAATT
  Y
  TACCTCATAA ACTAAGGTAA GGAGTGACTG AGGAGAGCAG CTGTCATCCA CTTCTGACTT
  CCACACGTGC AGAGAGGAAA AGGAGGGATG GGAGGGAAGA GGAGGGAGGG AGGAGGGAGG
  ATGGAGGAGG GAGGGAGGGA GGGACTGAGA GACAAAGAAA GAGGACAGAG GGAAAGACAC
  AGAAATATAC ACAGAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49583880	NES12874198	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29946954					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583880	NES12874198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39256184 () rs orientation: forward

Symbol	Name	Function Class
Rr575739	regulatory region 575739	593 bp proximal