rs29946962 SNP Detail

Summary

• ID
  rs29946962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39255893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGATCTA ACTTAATCTA
  GAAATAAATA AATAAACATC TTTGAATTTT TTTGTGTGTG CATCAAAATA AAACCAGTGA
  TTTTCTTTTT TGGATGCATT TTGAATGAAT GCTGTTGACC ATTGTTGTAG AAATTTGGAA
  ATAGAACAGA TTTAGAGACA TGAAGTTCAG TTTGATTAAA AAGAAATCTT GGCAGCTTTT
  W
  TGTGATTGTC ACAGGGCAGA GGTGTGTGAC AAAGATGGAT GGTCAACCCA CAAAGAAGAG
  AAAAGGCTCC ACTTGTATCT TGGGGCAATG GGTAAGACTT AGCCTGTGAA GTTATTGTCA
  CACAAGCTTG AACTCATGAG AACAATTCCT AGGGCCTGTC TAAATGTTAG GCACAGCAGC
  AGGGAACACC TAAAGTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46420882	mCV22938849	ABI	CRAMUS_MOUSE	r	SNP			A					T		T
ss49583888	NES12874187	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	T		A	A	A	A	A	A	A	A	A
ss134849720	ENSMUSSNP1575063	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29946962					SNP	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583888	NES12874187	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39255893 () rs orientation: forward

Symbol	Name	Function Class
Rr575739	regulatory region 575739	884 bp proximal