rs29947248 SNP Detail

Summary

• ID
  rs29947248
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75293910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG ACAGAGCACC CTTACTTGCA
  S
  TAGGGATGAG TAAGCTCTTG ACTCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46358571	mCV23593155	ABI	CRAMUS_MOUSE	f	SNP		C	G					C	G
ss47737256	NES11306015	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		G	G	G		G	G	G	G		C
ss136640754	ENSMUSSNP4360217	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
ss323008198	CHEV_9_75234435	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29947248					SNP	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737256	NES11306015	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75293910 () rs orientation: forward

Symbol	Name	Function Class
Gm67678	predicted gene, 67678	838 bp downstream
Mapk6	mitogen-activated protein kinase 6	154 bp downstream
Rr683127	regulatory region 683127	1607 bp distal
Tssr90534	transcription start site region 90534	598 bp downstream
Tssr90535	transcription start site region 90535	840 bp downstream
Tssr90536	transcription start site region 90536	1259 bp downstream
Tssr90537	transcription start site region 90537	1331 bp downstream
Tssr90538	transcription start site region 90538	1362 bp downstream