rs29948574 SNP Detail

Summary

• ID
  rs29948574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66056304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAACACGT TCAACAAAAT ATCAGGATTA CAAAATTAAC
  AGACAAAAAA AAAATCAAAA GCTTTCCTAT AGACAAACAA CAAATGAATT GATAAAGAAA
  Y
  CAGAAAGCCA TACCTTTCAA AGGGACTGAG GAAAAAAAAA ATCTCGAGGT AACTCTAACT
  AAGCAAATAG GAAACTTCTA TAATAAAAGC CGTAAGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39631832	mCV23206786	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147322696	ENSMUSSNP137420	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29948574					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66056304 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	865 bp downstream
Gm50119	predicted gene, 50119	823 bp downstream
Gm58551	predicted gene, 58551	1550 bp upstream
Rr346799	regulatory region 346799	704 bp distal
Rr346800	regulatory region 346800	1097 bp proximal
Rr353052	regulatory region 353052	903 bp distal
Rr353053	regulatory region 353053	1496 bp proximal
Rr393825	regulatory region 393825	980 bp upstream