rs29951074 SNP Detail

Summary

• ID
  rs29951074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39264256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGCAG AGTCTGGGCT
  TTCCGGGTGC TCAGGGATTC ACCAAGATGG GCAGAGATGA GACGGCTGGT AGGGGATGGT
  GTGAGCTGGG TAAATCTGGG TCCTCCTGAG AGCTGAACGA AGATGAGACT GCAGCTACAG
  TGCTGACTAT GTTAATGGTT TCCTGATGGA AATGGTGTAG TTCCCAGGCA AAGCTGGAAG
  Y
  TAGCAAAACA GTGGAGATGA GGCCTTAAAA GTGGAGAAGT TGTTCTGAAA GATACAGTAG
  TCCAATGCAT TCAATAGATG CCTTTTGATT GCCCTATCTC TGTCAGGCAC TGTTTATTAT
  TATAACTGTG AGGAGGAGGA GGAGGAGGAG GAAGATGTCT GGTATGTGTA TATGTATGTG
  TATATGTGTC TATCTCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49583770	NES12873683	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29951074					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583770	NES12873683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39264256 () rs orientation: forward

Symbol	Name	Function Class
Rr575740	regulatory region 575740	1120 bp distal
Rr575741	regulatory region 575741	within coordinates
Rr575742	regulatory region 575742	1620 bp proximal