rs29952570 SNP Detail

Summary

• ID
  rs29952570
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156263964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGTACGG GAGAGCCCTA
  CTGCCAGTGG AGCCTGGCTC CCAGCTGAGC TGAAGCAGAG GGCGTGGCCT GCTCAAATCC
  CGGGTGTGTG TTTGTGAGGG GTGGGGTGGG GGATTAGGTG TGAAGAGGGT GTGTCTGTGC
  GCAGGCATGG GTGTGGGTAG AAGCAACAGA GGCCCCTCAG CGGGGTTCTG TGATATGTTT
  M
  CTTGCTGTGT AACGACCATC ACCCTGGCCA GCTACAGCCC AGCCTGGTTA GGTACCCTCC
  ACCCTCACCC TGGACACTGT TCGGAAGGGC AGCAGCCTAG GTACCCTACA AAGACTAGTA
  AAACTGATCA CTATCTTAAA TGGCCAGCGC CCCACTCCAA GGAATCCCCT CTCAGAAGGT
  CTTCATACTT TGAGAGAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss45379321	mCV23687279	ABI	CRAMUS_MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs29952570					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss148072181	ENSMUSSNP2509368	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156263964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	62 bp distal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	1293 bp downstream
Tssr21157	transcription start site region 21157	1182 bp downstream
Tssr21158	transcription start site region 21158	1001 bp downstream
Tssr21159	transcription start site region 21159	979 bp downstream
Tssr21160	transcription start site region 21160	968 bp downstream
Tssr21161	transcription start site region 21161	930 bp downstream
Tssr21162	transcription start site region 21162	921 bp downstream
Tssr21163	transcription start site region 21163	901 bp downstream
Tssr21164	transcription start site region 21164	870 bp downstream