rs29953830 SNP Detail

Summary

• ID
  rs29953830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20367692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT GCACCGATGA GCCCCAACCC
  R
  CTTTATTCTT CTTGTCCCTT GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39135626	mCV27590361	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148761255	ENSMUSSNP165515	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324281235	CHEV_13_20275391	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29953830					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20367692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	1728 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	309 bp proximal
Rr270988	regulatory region 270988	1309 bp proximal
Rr281054	regulatory region 281054	708 bp proximal
Rr403595	regulatory region 403595	1541 bp upstream
Tssr118580	transcription start site region 118580	1418 bp upstream
Tssr118581	transcription start site region 118581	1476 bp upstream
Tssr118582	transcription start site region 118582	1765 bp upstream
Tssr118583	transcription start site region 118583	1800 bp upstream
Tssr118584	transcription start site region 118584	1881 bp upstream
Tssr118585	transcription start site region 118585	1894 bp upstream