rs29954302 SNP Detail

Summary

• ID
  rs29954302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90944243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT CTGCCATCCC TCACTGACCT
  Y
  CACTGCCCAT TCATTGGCTC ATCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45379438	mCV22767403	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146922364	ENSMUSSNP3435862	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320391686	CHEV_2_90954055	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29954302					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90944243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	1144 bp proximal
Rr373534	regulatory region 373534	231 bp downstream
Rr560649	regulatory region 560649	1010 bp distal
Rr560650	regulatory region 560650	42 bp proximal
Rr560651	regulatory region 560651	1291 bp proximal
Rr560652	regulatory region 560652	1354 bp proximal
Spi1	Spi-1 proto-oncogene	Intron
Tssr18850	transcription start site region 18850	620 bp downstream
Tssr18851	transcription start site region 18851	360 bp upstream
Tssr18852	transcription start site region 18852	417 bp upstream
Tssr18853	transcription start site region 18853	1262 bp upstream
Tssr18854	transcription start site region 18854	1297 bp upstream
Tssr18855	transcription start site region 18855	1462 bp upstream
Tssr18856	transcription start site region 18856	1509 bp upstream
Tssr18857	transcription start site region 18857	1624 bp upstream
Tssr18858	transcription start site region 18858	1688 bp upstream
Tssr18859	transcription start site region 18859	1795 bp upstream
Tssr25158	transcription start site region 25158	1847 bp downstream