rs29955017 SNP Detail

Summary

• ID
  rs29955017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCCTCT GACCGCTGCA
  TGTACAGCAC AACACAGCAC AGCACATGTG AGTGTGCATA CATCATGCAC ACACATCATA
  CATACATCAT GTGCACATAT CATGCACACA CATCATGTGC ACACATCATA CACACATCAT
  GCACACACAT CATGTGCACA CATCATGCAC ACACATCATA CATACATCAT GTGCACATAT
  Y
  ATGCACACAC ATCATGTGCA CACATCATGC ATACACATCA TACACACACA TCATGCACAC
  ACATCATGTG CACATATCAT ACACACATCA CGTACACACA TCATGCACAC ACATCATACA
  CACATATCAT GTGCACCCAT CATGTGCACA CATCATACAC ACATCATGTA CATGCACACC
  CACAATAGTG ATAAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45379343	mCV23187175	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29955017					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909326 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr52793	regulatory region 52793	1697 bp proximal
Tssr21713	transcription start site region 21713	1687 bp downstream
Tssr21714	transcription start site region 21714	722 bp downstream
Tssr21715	transcription start site region 21715	688 bp downstream
Tssr21716	transcription start site region 21716	638 bp downstream
Tssr21717	transcription start site region 21717	545 bp downstream
Tssr21718	transcription start site region 21718	498 bp downstream
Tssr21719	transcription start site region 21719	404 bp downstream
Tssr21720	transcription start site region 21720	211 bp downstream
Tssr21721	transcription start site region 21721	166 bp downstream
Tssr21722	transcription start site region 21722	693 bp upstream