rs29955487 SNP Detail

Summary

• ID
  rs29955487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGAATG ACCTTGTCTT
  TCATCCTCCT GTCTCCACTT CCCAAGTTCT GAGCCTCCAT ACCCAGGCTC CCGATTTATG
  CTTTAATGGC ATATAGGAAA TGGCCCAACT AAAGTTTCTC TTCACTTTAT GATTAGTGGA
  CAACTAGTGA TGTTTTCTTA GTTGGATGAT TCAGTTTCTC TTCACTAGTT TTGGATACAC
  R
  TGTACATATT CTTACAAAGT AGACCTAAGT AAGGCCAGTA TTCTGCTCTG TTAGCTTTAC
  ATACGAGCAT AAAAATCCCT GTCACACCAT TTGAAATCAT AGGTATTTAT TGTTGGTAAA
  GAAGTTGTTT GAAGCCAGGA ATTATATTAG TGAACCAGCC GACTTCCATG TTAGACTTGA
  AAGAGCCAAA GAACCATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39631774	mCV27569845	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146607090	ENSMUSSNP1538486	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss325524299	CHEV_18_10611411	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29955487					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	765 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1061 bp upstream
Rr533778	regulatory region 533778	1315 bp distal
Rr533779	regulatory region 533779	1637 bp distal
Rr533780	regulatory region 533780	571 bp distal
Rr533781	regulatory region 533781	1277 bp distal
Rr533782	regulatory region 533782	971 bp distal
Tssr152429	transcription start site region 152429	1297 bp upstream
Tssr152430	transcription start site region 152430	1269 bp upstream
Tssr152431	transcription start site region 152431	1125 bp upstream
Tssr152432	transcription start site region 152432	1101 bp upstream
Tssr152433	transcription start site region 152433	1050 bp upstream