rs29956206 SNP Detail

Summary

• ID
  rs29956206
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60709880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTTCTT TGCCTATAGA AAAAAGAAAG TCTGTTTGTT
  TTTCTGATTC AGTCAGCCCT TTTAGTCTTT GAGTCTAAGG AGAGGCTTGT GAAAAGAGCA
  W
  CTTATCAGCA TGCTCCAGCC AGCAGGCTGT GCCCCCCTCC ACAACCAAAC CTCCAGCCTC
  TCTCAGCAAA AGGCCTCACC CTCTGAGCCT TTTCCCATT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45379715	mCV25148979	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146652164	ENSMUSSNP375085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29956206					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60709880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11682	CpG island 11682			1279 bp proximal
Gm74812	predicted gene, 74812			1445 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr396988	regulatory region 396988			1161 bp upstream
Rr557729	regulatory region 557729			1179 bp distal
Rr557730	regulatory region 557730			46 bp distal
Rr557731	regulatory region 557731			955 bp proximal
Rr557732	regulatory region 557732			1892 bp proximal
Tssr24230	transcription start site region 24230			1648 bp downstream
Tssr24231	transcription start site region 24231			1735 bp downstream
Tssr24232	transcription start site region 24232			1761 bp downstream
Tssr24233	transcription start site region 24233			1798 bp downstream
Tssr24234	transcription start site region 24234			1824 bp downstream