rs29956562 SNP Detail

Summary

• ID
  rs29956562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158200752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGTGCACT TCTGCCACTG GCAGAAGAAT GAACGGGAAG
  GGAGGGGCCT CAAAGAGCCA GAGCAGATAG GTGCTCCGGA CCACCCTAAC TCTCCATCGT
  Y
  CAACTATGAC TTTTCCCTCC ACTGCTAACA AGTCACTGCT ACCCAACACA ATGACAAAAA
  GAGGGAGACC GTGGCATATA CAAGTGTCTT CAATGCCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45380699	mCV22846365	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss148114110	ENSMUSSNP6251369	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29956562					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158200752 () rs orientation: forward

Symbol	Name	Function Class
Gm23925	predicted gene, 23925	966 bp downstream
Gm26003	predicted gene, 26003	360 bp upstream
Gm75379	predicted gene, 75379	1268 bp downstream
Rr568742	regulatory region 568742	1011 bp proximal
Rr568743	regulatory region 568743	1701 bp proximal
Snhg17	small nucleolar RNA host gene 17	within coordinates
Tssr27224	transcription start site region 27224	1735 bp downstream