rs29957076 SNP Detail

Summary

• ID
  rs29957076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72778896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GAGAAGATCA TGCTGGCCAT
  Y
  ATCACCAAGA TGACCCTCAC GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39135664	mCV25188341	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss144619277	ENSMUSSNP1744014	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss324432624	CHEV_13_72768225	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29957076					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72778896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	1013 bp distal
Cpgi5832	CpG island 5832	within coordinates
Irx2	Iroquois homeobox 2	within coordinates
Tssr120305	transcription start site region 120305	1982 bp downstream
Tssr120306	transcription start site region 120306	1952 bp downstream
Tssr120307	transcription start site region 120307	1929 bp downstream
Tssr120308	transcription start site region 120308	1837 bp upstream