rs29957158 SNP Detail

Summary

• ID
  rs29957158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144111496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCCGGACG TGGTGGCGTA TGCCTTTAAT CCCAGCACTT
  GGGAGACGGA TTTCTGAGTT CGAGGCCAGC CTGGTCTACA AAGTGAGTTC CAGGACAGCC
  R
  GGGATATACA GAGAAACTGT CTCGAAAAAC AAAAACAAAA ACAAAAAAAA AAATGTTTGC
  CCATTCAAAG GTACTTAAAA TGAAATCTTA ATTCAGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45380112	mCV22516062	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147789038	ENSMUSSNP6266470	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs29957158					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144111496 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			540 bp proximal
Mgme1	mitochondrial genome maintenance exonuclease 1			1328 bp upstream
Rr397362	regulatory region 397362			1175 bp upstream
Rr397363	regulatory region 397363			1840 bp upstream
Rr566423	regulatory region 566423			1385 bp distal
Rr566424	regulatory region 566424			64 bp distal
Rr566425	regulatory region 566425			238 bp proximal
Rr566426	regulatory region 566426			986 bp proximal
Rr566427	regulatory region 566427			1376 bp proximal
Snx5	sorting nexin 5			Intron
				Noncoding-Transcript-Variant
Tssr20524	transcription start site region 20524			998 bp upstream
Tssr20525	transcription start site region 20525			1046 bp upstream
Tssr20526	transcription start site region 20526			1302 bp upstream
Tssr20527	transcription start site region 20527			1435 bp upstream
Tssr26594	transcription start site region 26594			490 bp downstream
Tssr26595	transcription start site region 26595			864 bp downstream
Tssr26596	transcription start site region 26596			928 bp downstream
Tssr26597	transcription start site region 26597			1204 bp downstream
Tssr26598	transcription start site region 26598			1260 bp downstream
Tssr26599	transcription start site region 26599			1276 bp downstream