rs29958266 SNP Detail

Summary

• ID
  rs29958266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18678667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATGTCTTTT GAAAGTTGTT CATTTTGAAA TTTACTGTGT AAACTACCTT CAGTTTCTCC
  TTTGCTTTCA GTCCATCCAG CAACCACTGC CCCCCCTTTC TTTGAGGTAT TTAAAAAAAA
  AATACTAAGA CGAAATAAAA GAAGGTAATT GAAAAGAGAG TGACAGCAGA TTATTGATGT
  ATTCTCTTTA TTGTTTTGCA GTTAACCTTG TTCATCTCAT CCATTTACAA TTGAATTTTT
  GTTATATTTT CTAAAGAGGA AGTTTTACCA AAACCAAATA TTCCTCTTAG GAACAGGGGC
  Y
  TAAAGGATTT GTAATCATTA GCAATTAATT TATTTTAGAT CACCCATACT TGAAACAGAT
  CGACCCAGTG GTTTTAAAGC ATTGTCATGC AGCAGCTGCA ACTTGCATCC TGGAGGCAGG
  AAAGCACCAA GTTGACAAGT CTACTCTAAG GTACAGACTT TATCTAATGC CCGCTTACTT
  TGAAGTGGTA TCTTTGTCAT TGTAATTTCA GTTTTTAAAG ATAGAGACTA AACCTTGCTT
  TATTTCCCCC CCCTCCTGCC CCCTTCAGCA CTTATTTAGA AGACTGTAAA TTTGACCGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45380014	mCV22698409	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29958266					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18678667 () rs orientation: forward

Symbol	Name	Function Class
Commd3	COMM domain containing 3	within coordinates
Cpgi11239	CpG island 11239	762 bp distal
Rr372858	regulatory region 372858	442 bp downstream
Rr552336	regulatory region 552336	1482 bp distal
Rr552337	regulatory region 552337	1423 bp distal
Rr552338	regulatory region 552338	1775 bp proximal
Tssr411	transcription start site region 411	1588 bp downstream
Tssr16385	transcription start site region 16385	1374 bp downstream
Tssr16386	transcription start site region 16386	1352 bp downstream