rs29958693 SNP Detail

Summary

• ID
  rs29958693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTCCGCG TTCCCCCTCA AAGCCCCACA CGGGGCTCCC
  GACCGCGGGC GCTCAGCTAC CTACTCTCGG AGGAGGCTGC CAGGCCCACC CGACGTCTCC
  Y
  GGCCGGCGGC GGGGCGCTCC TCGCTTCCTA GCCGGGCGCC GCGGCGAGCG GGCGCCAGTT
  CCGCGTCTGC ACCGGGGGGC GCGTACCACT CAGCCCCGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45380823	mCV22766097	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss146923557	ENSMUSSNP6651040	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320391932	CHEV_2_91022989	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29958693					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	within coordinates
Gm74571	predicted gene, 74571	370 bp downstream
Madd	MAP-kinase activating death domain	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1229 bp downstream
Rr367225	regulatory region 367225	1056 bp upstream
Rr397125	regulatory region 397125	267 bp upstream
Rr560660	regulatory region 560660	633 bp distal
Rr560661	regulatory region 560661	within coordinates
Rr560662	regulatory region 560662	156 bp distal
Rr560663	regulatory region 560663	6 bp proximal
Rr560664	regulatory region 560664	65 bp proximal
Rr560665	regulatory region 560665	976 bp proximal
Tssr18868	transcription start site region 18868	620 bp downstream
Tssr25161	transcription start site region 25161	36 bp downstream
Tssr25162	transcription start site region 25162	109 bp downstream
Tssr25163	transcription start site region 25163	185 bp downstream
Tssr25164	transcription start site region 25164	991 bp downstream
Tssr25165	transcription start site region 25165	1009 bp downstream
Tssr25166	transcription start site region 25166	1122 bp downstream
Tssr25167	transcription start site region 25167	1145 bp downstream