rs29958840 SNP Detail

Summary

• ID
  rs29958840
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38222405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA GGGGAGATAG ATATTCACAC
  S
  AGGTAAATTA TTTGAATTAA AATTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss39137147	mCV23910871	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss148892393	ENSMUSSNP2113887	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29958840					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38222405 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	1360 bp upstream
Cpgi5461	CpG island 5461	799 bp distal
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	4 bp distal
Rr369679	regulatory region 369679	974 bp downstream
Tssr119342	transcription start site region 119342	1119 bp downstream
Tssr122123	transcription start site region 122123	1516 bp upstream
Tssr122124	transcription start site region 122124	1482 bp upstream
Tssr122125	transcription start site region 122125	1271 bp upstream
Tssr122126	transcription start site region 122126	1245 bp upstream
Tssr122127	transcription start site region 122127	497 bp upstream
Tssr122128	transcription start site region 122128	477 bp upstream
Tssr122129	transcription start site region 122129	445 bp upstream