rs29959376 SNP Detail

Summary

• ID
  rs29959376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30951410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGAAG AAGAAGGAGG
  AGGAGGAGGA GGATGAGGAG GAGGAGGGAA GAAGAGGGGA GGGGGGAGAG AGGGGGAAGA
  AGCAAGCTAG TTCTACAACC ATGTCATTAC TAGCACAAGT CCCCTCAGCT GTGTCTGAGG
  GAGCAACTAT TCACACTGGG CTCCTTTGTT CTGCCTCCTC CTCCTTAGAC CTATGTTCTG
  R
  AAGGCCTGGT AGACTTGGTG TTTTTTTTTT TTTTCTGTTT GTTGTGTTTT TTTTTCATTT
  TTAGAAAAAA AATTTAATAT CTAGTGTGTG AGTTTACCTA CTTGTAGGTA CATGCACATG
  CAGTACTTGT AGGGCCAGGG AGGGGGGTCT GATCCCCTGT AACTGTAGGT ACAGGTGGTT
  GTTAGCCACA TACGCGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087312	NES12453923	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29959376					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087312	NES12453923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30951410 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	451 bp downstream
Rr476644	regulatory region 476644	1199 bp distal
Rr476645	regulatory region 476645	within coordinates
Rr476646	regulatory region 476646	343 bp proximal
Tssr119115	transcription start site region 119115	1248 bp downstream