rs29959377 SNP Detail

Summary

• ID
  rs29959377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:30950564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAAATT GTTAAGGTCT
  CTGTTTTTGT TATTTATCTC CCTAAATCAC ATGGCTGCTG CATACATTGC AATGTTGCCC
  TACCACATGT ATGTTTTTGC AAGTTGCTTC TTCACTCATT GAAGAAGCCT GCACCGTAAG
  TGAAACTCAC TTAGTCCTTG CTAATTGCTG CTCACTGTCA CGTGAACGCA GAGAAGGCTG
  R
  TTTTCCTGGA CCCATTTTCA GTGCTTTGAG GAACATGAGT CCAGAGTATA TTGAAGTAGA
  AGACAGTGTT TGGCAAGCCA GTTCTTATTA GACACTGCTA CAGGCTTCAC AATCTTCAAG
  GTGGACCCAC CTCATGTGGA AGGGCATCAT TGCCCCTCTG CTCCCATGCG CTGTGCACCC
  CCTTCACAGT GAAAGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087313	NES12454106	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29959377					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087313	NES12454106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30950564 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	mRNA-UTR
Rr476643	regulatory region 476643	1809 bp distal
Rr476644	regulatory region 476644	353 bp distal
Rr476645	regulatory region 476645	within coordinates
Rr476646	regulatory region 476646	1189 bp proximal
Tssr119111	transcription start site region 119111	1789 bp downstream
Tssr119112	transcription start site region 119112	1740 bp downstream
Tssr119113	transcription start site region 119113	1721 bp downstream
Tssr119114	transcription start site region 119114	1693 bp downstream
Tssr119115	transcription start site region 119115	402 bp downstream