rs29959380 SNP Detail

Summary

• ID
  rs29959380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30950009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTATCCT AGGGAGAAAA
  TATGCAAGTC TCACGGGTGC TTTCTGTTGG CTTGTTTCTG GTCCTTGAGC AGGCTTAAGT
  ATCTAGTTTC AAACTAGAAG CCCCAAAGCC CTCAGTCGTT GTCCTGGACA GAGTTGGTAG
  ACCCCACCTG TAGAAATCCA GATGCACTCT GGGATTGGAG CACAGAGAGG CTTGCTCTAT
  S
  GTGAGAATGC CCAGCCTGCA GAGGCCCAGG TGCGGTGCCT GAGTGGCTGT ATGCCAGACA
  CAGGAACGCC AGCAGGCTGA GTGTGGTGAC TGATATGTGA GGTGCCCTTG CCCTGCAGAC
  AGGCTGAATG TGAGCCCCAG CAGCAGAGGA TTCTGAGAGT CAGGGTGGTG TCATGTCCTA
  CACAGGAAGA GCCTTCAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087316	NES12454100	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29959380					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087316	NES12454100	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30950009 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476643	regulatory region 476643	1254 bp distal
Rr476644	regulatory region 476644	within coordinates
Rr476645	regulatory region 476645	332 bp proximal
Rr476646	regulatory region 476646	1744 bp proximal
Tssr119108	transcription start site region 119108	1894 bp downstream
Tssr119109	transcription start site region 119109	1502 bp downstream
Tssr119110	transcription start site region 119110	1453 bp downstream
Tssr119111	transcription start site region 119111	1234 bp downstream
Tssr119112	transcription start site region 119112	1185 bp downstream
Tssr119113	transcription start site region 119113	1166 bp downstream
Tssr119114	transcription start site region 119114	1138 bp downstream
Tssr119115	transcription start site region 119115	146 bp upstream