rs29959381 SNP Detail

Summary

• ID
  rs29959381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:30949894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACACAA AGAGGAACAC
  CTTCCTCGTC CCTTGCTGAA ACAAAGTGCA ATGCACACAG TAGAATTTAG TTTGCTTGCA
  CTGGAAGATG CCGTTGAAGA GGTAGGCTGA GGAACACTGT ATCCTAGGGA GAAAATATGC
  AAGTCTCACG GGTGCTTTCT GTTGGCTTGT TTCTGGTCCT TGAGCAGGCT TAAGTATCTA
  R
  TTTCAAACTA GAAGCCCCAA AGCCCTCAGT CGTTGTCCTG GACAGAGTTG GTAGACCCCA
  CCTGTAGAAA TCCAGATGCA CTCTGGGATT GGAGCACAGA GAGGCTTGCT CTATCGTGAG
  AATGCCCAGC CTGCAGAGGC CCAGGTGCGG TGCCTGAGTG GCTGTATGCC AGACACAGGA
  ACGCCAGCAG GCTGAGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49087317	NES12454098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29959381					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087317	NES12454098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30949894 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	mRNA-UTR
Rr476643	regulatory region 476643	1139 bp distal
Rr476644	regulatory region 476644	within coordinates
Rr476645	regulatory region 476645	447 bp proximal
Rr476646	regulatory region 476646	1859 bp proximal
Tssr119108	transcription start site region 119108	1779 bp downstream
Tssr119109	transcription start site region 119109	1387 bp downstream
Tssr119110	transcription start site region 119110	1338 bp downstream
Tssr119111	transcription start site region 119111	1119 bp downstream
Tssr119112	transcription start site region 119112	1070 bp downstream
Tssr119113	transcription start site region 119113	1051 bp downstream
Tssr119114	transcription start site region 119114	1023 bp downstream
Tssr119115	transcription start site region 119115	261 bp upstream