rs29959382 SNP Detail

Summary

• ID
  rs29959382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30948822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGACAG AGTCTCAAAG
  CTACCGGGCT TCTTTTCCAA CAACACATTC TTTCACAGAA TCCCAAAGAG TCTCACTTGC
  CTTCACAACC GTCTGATCCT TTATTGTTAC TGTTTTGTTT AGGTGGCTTT GCCATGCTCT
  GGGATTTTTC TCCTACCACA ACATCATTCC TGACTCTTTC GGGCTCAGAA AGAGTTAAGC
  R
  CTCTTGCACA CTTGGCACTT ACTTCTTTTT AATTTTTTTT TTAACATGCC ACTCTTAATA
  TTTCTTCTTA AGTCTTTCAG CAGCATACAT TCAATAAGCA ATGGACCATT GGGTGTCTCA
  TTTCATTGTT TTATTTTTAA AAAGGAACCT TTGACAAATA ATACACATTA CAGAAAATGG
  AAGCATTTTT CATAGAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087320	NES12454091	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29959382					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087320	NES12454091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30948822 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476643	regulatory region 476643	67 bp distal
Rr476644	regulatory region 476644	959 bp proximal
Rr476645	regulatory region 476645	1519 bp proximal
Tssr119108	transcription start site region 119108	707 bp downstream
Tssr119109	transcription start site region 119109	315 bp downstream
Tssr119110	transcription start site region 119110	266 bp downstream
Tssr119111	transcription start site region 119111	47 bp downstream
Tssr119112	transcription start site region 119112	within coordinates
Tssr119113	transcription start site region 119113	13 bp upstream
Tssr119114	transcription start site region 119114	38 bp upstream
Tssr119115	transcription start site region 119115	1333 bp upstream