rs29959682 SNP Detail

Summary

• ID
  rs29959682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40141171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTGAA GGTTCTTGCC
  ATGAAATACC CCCATTCTCA AAGGCATAAG AAGAGACTCT GTCCTCCACT GTGAGAGCAT
  TGGTTTTATT CAGACTCCAC CATGCCATTG GTGTCCAGTG CTGCAGTTTG AACTTTTCTT
  GGAGGTCTTG GCAAGCCATT GTCTCTCTTG TTTGTCTATT GACATCACTG ATAACTCTGA
  Y
  AAGTCACTAC TCAGTCCCTA GAAATCCATC TAAGTGTTCT GCTCCCATTG CATCTAAACT
  GTAACATTTA GAGTCTGAAG GTCCTTCAGA TGACTGCAGA TGGTGCCATT GGCAAGGCAC
  ACAACCTGGC CCTGGAGCTG GAGTCCCAAT CTATTTACAA CAATTGGTAG ATTAATAGTG
  GATTAGATTA CCCAGGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49586348	NES12859566	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29959682					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49586348	NES12859566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40141171 () rs orientation: forward

Symbol	Name	Function Class
Rr575791	regulatory region 575791	89 bp proximal