rs29959901 SNP Detail

Summary

• ID
  rs29959901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35355372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTTTGGCT GGCTAGCAAG CCCCAGGGAT CCCTGCCTCT
  GCCTCCCACT GCTGGTGTTA CAGGAGCTGG GTGTGCTCAG GATGCAGATT CAGGACCCCA
  Y
  ACTTCCATAG CAAGCATTTT ACCCAACAAG CCATCTTTTA ACCTGGGAAT ACTTCCTCTG
  CATTATTTCT CACACCCTGT ATTCTCTTCC TAACTGCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39136569	mCV25144918	ABI	CRAMUS_MOUSE	f	SNP	C			T	C
ss51091139	NES14361621	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		C	T	C		T	C		C
ss148862450	ENSMUSSNP1725030	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				C
ss324314280	CHEV_13_35263258	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29959901					SNP	C	C	C	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51091139	NES14361621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35355372 () rs orientation: forward

Symbol	Name	Function Class
Rr275746	regulatory region 275746	229 bp proximal
Rr275747	regulatory region 275747	1229 bp proximal