rs29959998 SNP Detail

Summary

• ID
  rs29959998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112500420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  CGCGGGCATG GTTGGGGGGA AGGAGATAAA GGTTAGAAAA TAGCTTTCAG TGTGAGTTCC
  AAAGCTGAAA CTTATGTCAT CAGACTTGAT GACAGACATT TTTATCCACT GAGCCATCTA
  R
  CTGGCTGCGG TAATTTAATA GTATGAGAGT TACATAAGTA GCATTATTAA TTATCCAATT
  AATTATGTAC ACTTGCTGTC ATCTAGCATA CAGTGAAATG GTCTCCATTG TGTGGCACTC
  AATGATAGTA ACAAGCTTGA ATCCATCAGC TATGGTTCAA AGAACTTACC CCCTCCCCCA
  CTTTCTTCCT GCTTTTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39136165	mCV23355079	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss145237618	ENSMUSSNP3027283	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29959998					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112500420 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
D13Mit260	DNA segment, Chr 13, Massachusetts Institute of Technology 260	1710 bp proximal
Gm48837	predicted gene, 48837	within coordinates
Rr278286	regulatory region 278286	1924 bp distal
Rr282338	regulatory region 282338	220 bp distal
Rr282339	regulatory region 282339	1582 bp proximal
Tssr121108	transcription start site region 121108	450 bp downstream
Tssr121109	transcription start site region 121109	418 bp downstream