rs29960334 SNP Detail

Summary

• ID
  rs29960334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30948573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTTTTT TGTAAAGAAA
  GGAAGAGAGA GAGACCGAAT ATACTAGAGA TAGATTTTTA AAATTCTGTG CCATTTCCCC
  TTCTATTTGT TTTGTTGGCC ATCAGTGGTC CCCATGGCAA CACTGGAAGG GCGGAGCCTT
  TGAGCAGGTT GGGAACTGTC CCGGACACCA GTGGTTCAGT GTACAGCTGT AGACTCAGTG
  R
  GCTGTTTCTG CTTATTTTGT ATATTAGATG CTTCCTTGTG CCAATAATAG TTTGACAGAG
  TCTCAAAGCT ACCGGGCTTC TTTTCCAACA ACACATTCTT TCACAGAATC CCAAAGAGTC
  TCACTTGCCT TCACAACCGT CTGATCCTTT ATTGTTACTG TTTTGTTTAG GTGGCTTTGC
  CATGCTCTGG GATTTTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087322	NES12454088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29960334					SNP	A	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087322	NES12454088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30948573 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476643	regulatory region 476643	within coordinates
Rr476644	regulatory region 476644	1208 bp proximal
Rr476645	regulatory region 476645	1768 bp proximal
Tssr119108	transcription start site region 119108	458 bp downstream
Tssr119109	transcription start site region 119109	66 bp downstream
Tssr119110	transcription start site region 119110	17 bp downstream
Tssr119111	transcription start site region 119111	197 bp upstream
Tssr119112	transcription start site region 119112	238 bp upstream
Tssr119113	transcription start site region 119113	262 bp upstream
Tssr119114	transcription start site region 119114	287 bp upstream
Tssr119115	transcription start site region 119115	1582 bp upstream