rs29960335 SNP Detail

Summary

• ID
  rs29960335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30948562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTAGAAT TGTTGCTTTT
  TTGTAAAGAA AGGAAGAGAG AGAGACCGAA TATACTAGAG ATAGATTTTT AAAATTCTGT
  GCCATTTCCC CTTCTATTTG TTTTGTTGGC CATCAGTGGT CCCCATGGCA ACACTGGAAG
  GGCGGAGCCT TTGAGCAGGT TGGGAACTGT CCCGGACACC AGTGGTTCAG TGTACAGCTG
  Y
  AGACTCAGTG AGCTGTTTCT GCTTATTTTG TATATTAGAT GCTTCCTTGT GCCAATAATA
  GTTTGACAGA GTCTCAAAGC TACCGGGCTT CTTTTCCAAC AACACATTCT TTCACAGAAT
  CCCAAAGAGT CTCACTTGCC TTCACAACCG TCTGATCCTT TATTGTTACT GTTTTGTTTA
  GGTGGCTTTG CCATGCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087323	NES12454085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29960335					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087323	NES12454085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30948562 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476643	regulatory region 476643	within coordinates
Rr476644	regulatory region 476644	1219 bp proximal
Rr476645	regulatory region 476645	1779 bp proximal
Tssr119108	transcription start site region 119108	447 bp downstream
Tssr119109	transcription start site region 119109	55 bp downstream
Tssr119110	transcription start site region 119110	6 bp downstream
Tssr119111	transcription start site region 119111	208 bp upstream
Tssr119112	transcription start site region 119112	249 bp upstream
Tssr119113	transcription start site region 119113	273 bp upstream
Tssr119114	transcription start site region 119114	298 bp upstream
Tssr119115	transcription start site region 119115	1593 bp upstream