rs29960336 SNP Detail

Summary

• ID
  rs29960336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30948495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGATCTA ACAACGGCTA
  CAAAGTTTTT TGTTGTTGTT GTCTCCCCTT TCTGTTTTGC CTCTCATTCT TTAGAATTGT
  TGCTTTTTTG TAAAGAAAGG AAGAGAGAGA GACCGAATAT ACTAGAGATA GATTTTTAAA
  ATTCTGTGCC ATTTCCCCTT CTATTTGTTT TGTTGGCCAT CAGTGGTCCC CATGGCAACA
  Y
  TGGAAGGGCG GAGCCTTTGA GCAGGTTGGG AACTGTCCCG GACACCAGTG GTTCAGTGTA
  CAGCTGTAGA CTCAGTGAGC TGTTTCTGCT TATTTTGTAT ATTAGATGCT TCCTTGTGCC
  AATAATAGTT TGACAGAGTC TCAAAGCTAC CGGGCTTCTT TTCCAACAAC ACATTCTTTC
  ACAGAATCCC AAAGAGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49087324	NES12454082	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29960336					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087324	NES12454082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30948495 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476642	regulatory region 476642	1984 bp distal
Rr476643	regulatory region 476643	within coordinates
Rr476644	regulatory region 476644	1286 bp proximal
Rr476645	regulatory region 476645	1846 bp proximal
Tssr119108	transcription start site region 119108	380 bp downstream
Tssr119109	transcription start site region 119109	5 bp upstream
Tssr119110	transcription start site region 119110	49 bp upstream
Tssr119111	transcription start site region 119111	275 bp upstream
Tssr119112	transcription start site region 119112	316 bp upstream
Tssr119113	transcription start site region 119113	340 bp upstream
Tssr119114	transcription start site region 119114	365 bp upstream
Tssr119115	transcription start site region 119115	1660 bp upstream