rs29960442 SNP Detail

Summary

• ID
  rs29960442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33036587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAGGGTC AGGAATGACT TGAATGGTAA TACCAGAAGA
  GGGGCAGGGA ATAACAGAGG CAAAGAAGAG TAATCCTTAA AACACCAATT CACTCTGAGA
  R
  AGAACTGTGC GTGGAAAAGA AGGGCTTGGG TCCTGTACAG GAGGCACACG GACCAGCACA
  GTGAAGCAAG AGTTTTAATA AAGTCCTGCA ACTAGTGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45879194	mCV25307433	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss60876106	NES15978859	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	A	G		G	G	G	G		G
ss133104402	ENSMUSSNP1564646	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321780405	CHEV_6_33009652	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29960442					SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876106	NES15978859	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33036587 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Cpgi17277	CpG island 17277	102 bp proximal
Rr146107	regulatory region 146107	within coordinates
Rr399607	regulatory region 399607	582 bp upstream
Tssr60218	transcription start site region 60218	520 bp downstream
Tssr60219	transcription start site region 60219	604 bp downstream