rs29960471 SNP Detail

Summary

• ID
  rs29960471
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12476475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCCCTG AGCCCGCAGT
  CGCCAGGACT CACCCCGGTG GTAGTAAGCG CTTTGCTCCG ACTTGTGTCC CCTGACGGAC
  GCCGTCCGGT TCCCGGAGCC GCCACAGGCA GAGGGCGGGG TCAGCCCGCG GCCGTTTCCG
  CGAGAACGAC TGCAGGGGCG GGGCGTCCGA GTGCTGCGAG CTGGGGCTGT TGGGCTCTTA
  M
  TGTCACACAC GCAGACCTAT GGCTGGCTGT GGGAGTGGCT GGCTGGGGTT GGGGTGTGGC
  TCACCTCACG TGCTGGAAGC CCCCAGGTTG ATTTCCACCC AGCTCTGCAC AAATCGGTCG
  GGGTGCACCC CTGTAGTTCC AGCCCTGCGA GGTGGAGGCA GGAGGACCAC AAGTTCAATG
  TCATACTGGA GAACTTAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39137169	mCV22708131	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148681965	ENSMUSSNP3166393	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29960471					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12476475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	within coordinates
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	858 bp downstream
Rr369647	regulatory region 369647	336 bp downstream
Tssr118345	transcription start site region 118345	897 bp downstream
Tssr121453	transcription start site region 121453	481 bp upstream
Tssr121454	transcription start site region 121454	177 bp upstream
Tssr121455	transcription start site region 121455	74 bp upstream
Tssr121456	transcription start site region 121456	45 bp upstream
Tssr121457	transcription start site region 121457	21 bp upstream