rs29960499 SNP Detail

Summary

• ID
  rs29960499
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40140691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCTAAA TGAGGAGCAA
  GGGCATGATG ACTCTTCTTG ACTACTCAGT CTACACACAC ACACACACAC AGATACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC AGATACACAC TTGGGCTGGA
  GAATGAATGC ACAGAGAACT AAGTCACAAT GACTGAGTTT ATCACCTTGG GCAGCCACAT
  K
  GGTGATGGCG GCAGGTGCTG ATTACTGTGA GAGAAAAGAG AGGGATGAGG AGTATGTTTG
  CGGCACTCAG GACACTCGGG GTAAAGAATG TGTCCTTAAA CTATAGCTTC TGTTGTTCGG
  CTCTCCTTTC ACAAATACTA ACACATCTCC TCACTAGGCC ACTGCAGACA GGATGTCTCA
  CCTGGGAAGT GAGCAAACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss49586355	NES12859556	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs29960499					SNP	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49586355	NES12859556	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40140691 () rs orientation: forward

Symbol	Name	Function Class
Rr575791	regulatory region 575791	569 bp proximal