rs29960518 SNP Detail

Summary

• ID
  rs29960518
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135286774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GAGTGGCCAT GATCATCAAG
  W
  GATCCTCCTA TTTCCCAGAC AGCTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45879011	mCV24021861	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss133802844	ENSMUSSNP2839207	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321986318	CHEV_6_135259794	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29960518					SNP	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135286774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	155 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Gm44274	predicted gene, 44274	1680 bp downstream
Pbp2	phosphatidylethanolamine binding protein 2	within coordinates
Tssr63760	transcription start site region 63760	573 bp downstream
Tssr63761	transcription start site region 63761	598 bp downstream